Professional software for data visualization, analysis and storage

Software (274.7 KiB)

Graphic workstation (SIKT)

Image processing: Zeiss ZEN 2.3
Deconvolution ● AiryScan processing ● Vis-Art 3D ● Colocalization-tool ● Dye Separation (Spectral unmixing) ● Mosaic merge (Tiles) ● Vis-Art ● Time Laps ● Maximum Intensity Projection ● Editing Background, Color, Brightness / Contrast, etc. ● Noise Reduction

Deconvolution: Huygens Professional 23.10
Deconvolution (of CLSM and ArrayScan data) using theoretical or measured PSF ● Express Deconvolution ● PSF measuring (PSF Distiller) ● Chromatic Abberation correction ● Tile stitching ● Vignetting correction ● Batch file processing

Visualization and analysis: Imaris 9.9.1
2D- and 3D-visualization and analysis of LSM-data ● 3D-surface rendering ● Colocalization ● Time series (4D) from Live Cell Imaging ● Movement tracking ● Data plots ● Included and link to matlab-algorithms for data processing

Data publication: Adobe package (Photoshop, Illustrator, Acrobat Pro)

Graphic workstation (VMF)

Image processing and analysis: Leica LAS-X 1.1.0
Mosaic merge ● Cropping ● Combine images ● Maximum Intensity Projection ● Editing Background, Color, Brightness / Contrast, etc. ● Noise Reduction ● Dye Separation: automatic, manual, spectral (Spectral unmixing) ● Segmentation ● Quantifying (Intensities, Photon Counts)

Deconvolution: Huygens Professional 23.10
Deconvolution (of CLSM and ArrayScan data) using theoretical or measured PSF ● Express Deconvolution ● PSF measuring (PSF Distiller) ● Chromatic Abberation correction ● Tile stitching ● Vignetting correction ● Batch file processing

Visualization and analysis: Imaris 9.9.1
2D- and 3D-visualization and analysis of LSM-data ● 3D-surface rendering ● Colocalization ● Time series (4D) from Live Cell Imaging ● Movement tracking ● Data plots ● Included and link to matlab-algorithms for data processing

Data Repository

Omero
Client-server software for managing, visualizing and analyzing microscopy images and associated metadata
https://www.openmicroscopy.org/omero/